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Comparison of the speed of the temporal Gillespie and rejection sampling algorithms on empirical time-varying networks.

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posted on 2015-10-30, 03:54 authored by Christian L. Vestergaard, Mathieu Génois

Ratio ΘRSTGA between the time per realization of a single simulation using rejection sampling and the temporal Gillespie algorithm on empirical face-to-face contact networks in different social settings (Table 1): (A) for a SIR process, without (TGA) and with (TGA + CR) contact removal; (B) for a SIS process. Simulations were performed with β = 1 000μ for the workplace and β = 100μ for the other networks. (Details on how simulations were performed are found in Methods.)

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