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The accuracy of the sQSSAp and the tQSSAp in heterogeneous environments.

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posted on 2024-06-06, 17:55 authored by Seolah Shin, Seok Joo Chae, Seunggyu Lee, Jae Kyoung Kim

(A) Homogeneous ICs that satisfy the validity condition of the sQSSAo throughout the domain (blue region). E0 ≡ 2μM, S0 ≡ 2μM and KM = 18.5μM. (B-C) Both the sQSSAp and the tQSSAp accurately capture the production of P throughout the domain (B) and the spatial average (C). (D) The ICs in (A) were heterogenized so that the validity condition of the sQSSAo model does not hold near x = 30μm (red region), unlike the other region (blue region). Here, E0(x) = S0(x) = 18.5(tanh(20x/3 − 190) + 1) + 10−4μM, which maintain the spatial average concentration with the ICs in (A), was used. (E-F) The tQSSAp model, but not the sQSSAp model, is accurate. (G) The homogeneous ICs that do not satisfy the validity condition of the sQSSAo through the domain. Here, E0 ≡ 400μM, S0 ≡ 300μM, and KM = 18.5μM. (H-I) The tQSSAp model, but not the sQSSAp model, is accurate. (J) The ICs in (G) were heterogenized so that the validity condition of the sQSSAo is satisfied in x < 15μm (blue region), but not in x ≥ 15μm (red region). Here, E0(x) = 300(tanh(2x/3 − 10) + 1) + 100μM and S0(x) = 290(tanh(10 − 2x/3) + 1) + 10μM, which keep the spatial average concentration with the ICs in (G), were used. (K-L) Both the sQSSAp and tQSSAp models are accurate. For all simulations, C0 ≡ 0μM, P0 ≡ 0μM and kf = 3.4 ⋅ 106M−1s−1, kb = 60s−1, kcat = 3.2s−1, DE = DS = DC = DP = D* = 0.2μm2/s.

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