ppat.1008376.g003.tif (9.32 MB)
Bacterial and fungal communities within the study cohort.
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posted on 2020-03-26, 17:25 authored by Mykhaylo Usyk, Christine P. Zolnik, Philip E. Castle, Carolina Porras, Rolando Herrero, Ana Gradissimo, Paula Gonzalez, Mahboobeh Safaeian, Mark Schiffman, Robert D. BurkA. The abundance plot represents the bacterial community structure of the study subjects. The operational taxonomic units (OTUs) were collapsed at the species level and the top 10 species are presented. Figure boxes labeled: L. iners, L. crispatus, Gardnerella and Diversity represent the vaginal community state types (CSTs) identified using hierarchical clustering. B. Heatmap showing the top 20 fungal species identified within the study subjects. C. albicans has the highest mean abundance. There were three vaginal fungal community states identified using hierarchical clustering as indicated by the separate boxes.
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V 216 S V 4 rRNA gene regionHPV infections progressIllumina MiSeq platformincident HR-HPV infectionstudy Background Human papillomavirusincident HR-HPV infectionsLDAV 1 GardnerelladiversityHR-HPV progressionCell Motility pathwayQIIME 2. Functional groupsCINCVMCosta Rica HPV Vaccine TrialV 1 genus Lactobacilluscervicovaginal microbiomeLinear Discriminant AnalysisNCTOTU
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