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\ p None B a = c @ = Z ?N*8 X" 1 Arial1 Arial1 Arial1 Arial1 Arial1 Arial1 Arial General ` b Table 4 Query Reference ID HSP length/total length identities/HSP length identities/total length G+C difference Distance DDH estimate (GLM-based) Prob. DDH>70% Prob. DDH>79% Pandoraea sp. 892iso Pandoraea anapnoica GCF_902459765.1 78.3 [ 7 4 . 3 8 1 . 8 % ] 0.1411 89.13 52.1 [ 4 9 . 5 5 4 . 8 % ] 0.0669 25.38 74.9 [ 7 1 . 4 7 8 . 1 % ] 0.1985 88.31 0.26 Pandoraea anhela GCF_902459655.1 48.1 [ 4 4 . 7 5 1 . 5 % ] 0.3215 8.92 29 [ 2 6 . 6 3 1 . 5 % ] 0.1476 0.07 42.4 [ 3 9 . 4 4 5 . 4 % ] 0.4217 0.31 0.69 Pandoraea apista GCF_001465595.2 48 [ 4 4 . 6 5 1 . 4 % ] 0.322 8.82 26.6 [ 2 4 . 3 2 9 . 1 % ] 0.1626 0.02 41.3 [ 3 8 . 3 4 4 . 3 % ] 0.4323 0.21 0.03 Pandoraea aquatica GCF_902459565.1 80.7 [ 7 6 . 8 8 4 . 1 % ] 0.1286 91.75 46.5 [ 4 3 . 9 4 9 . 1 % ] 0.0803 10.85 88.3 0.23 Pandoraea bronchicola GCF_902459805.1 48.6
[ 4 5 . 2 5 2 % ] 0.3173 9.79 27 [ 2 4 . 6 2 9 . 5 % ] 0.1603 41.8 [ 3 8 . 9 4 4 . 9 % ] 0.4268 Pandoraea capi GCF_902459735.1 61 [ 5 7 . 3 6 4 . 6 % ] 0.2337 45.76 29.3
[ 2 7 3 1 . 8 % ] 0.1458 0.08 51.6 [ 4 8 . 5 5 4 . 7 % ] 0.3455 4.22 0.78 Pandoraea captiosa GCF_902459775.1 48.7 [ 4 5 . 3 5 2 . 2 % ] 0.3164 9.99 28.4
[ 2 6 3 0 . 9 % ] 0.1515 0.05 42.6 [ 3 9 . 6 4 5 . 6 % ] 0.42 0.32 0.64 Pandoraea cepalis GCF_902459625.1 38.3 [ 3 4 . 9 4 1 . 8 % ] 0.4098 1.11 26.9 [ 2 4 . 6 2 9 . 4 % ] 0.1605 34.5 [ 3 1 . 6 3 7 . 6 % ] 0.5045 0.88 Pandoraea commovens GCF_902459615.1 85.3 [ 8 1 . 6 8 8 . 4 % ] 0.1056 95.14 54.2 [ 5 1 . 5 5 6 . 9 % ] 0.0625 32.2 81.4
[ 7 8 8 4 . 3 % ] 0.1615 96.5 Pandoraea communis GCF_902459745.1 43.9 [ 4 0 . 5 4 7 . 4 % ] 0.3559 4.04 26.8 [ 2 4 . 4 2 9 . 3 % ] 0.1614 38.5 [ 3 5 . 6 4 1 . 6 % ] 0.4599 0.09 Pandoraea eparura GCF_902459725.1 36.8 [ 3 3 . 4 4 0 . 3 % ] 0.426 0.75 27.5
[ 2 5 . 1 3 0 % ] 0.1571 33.6 [ 3 0 . 6 3 6 . 7 % ] 0.5161 0.01 1.02 Pandoraea faecigallinarum GCF_001029105.3 49.8 [ 4 6 . 4 5 3 . 2 % ] 0.3082 11.94 28.8 [ 2 6 . 4 3 1 . 3 % ] 0.1492 0.06 43.5 [ 4 0 . 5 4 6 . 5 % ] 0.4115 0.44 0.79 Pandoraea fibrosis GCF_000807775.2 [ 4 8 . 6 5 5 . 5 % ] 0.2918 16.86 26.7 [ 2 4 . 4 2 9 . 2 % ] 0.1618 44.1 [ 4 1 . 1 4 7 . 1 % ] 0.4064 0.52 0.16 Pandoraea horticolens GCF_902459555.1 41.6 [ 3 8 . 3 4 5 . 1 % ] 0.3767 2.47 [ 2 4 . 5 2 9 . 3 % ] 0.1612 36.9
[ 3 3 . 9 4 0 % ] 0.4771 0.04 0.35 Pandoraea iniqua GCF_902459685.1 39.5
[ 3 6 . 2 4 3 % ] 0.397 1.51 25.6 [ 2 3 . 3 2 8 . 1 % ] 0.1697 35 [ 3 2 3 8 % ] 0.4994 0.41 Pandoraea morbifera GCF_902459575.1 43.2 [ 3 9 . 9 4 6 . 7 % ] 0.3621 3.49 26.5
[ 2 4 . 1 2 9 % ] 0.1636 37.9 [ 3 4 . 9 4 0 . 9 % ] 0.4665 2 Pandoraea norimbergensis GCF_001465545.3 39.3
[ 3 6 4 2 . 8 % ] 0.3992 1.44 25.5
[ 2 3 . 2 2 8 % ] 0.1702 34.8 [ 3 1 . 8 3 7 . 9 % ] 0.5015 0.4 Pandoraea nosoerga GCF_902459585.1 40.8 [ 3 7 . 4 4 4 . 2 % ] 0.3849 2.03 36.3 [ 3 3 . 3 3 9 . 3 % ] 0.4842 3.47" Pandoraea sp. 892iso Pandoraea oxalativorans GCF_000972785.3 62.6 [ 5 8 . 9 6 6 . 2 % ] 0.2242 51.57 49.4
[ 4 6 . 8 5 2 % ] 0.073 17.48 [ 5 7 . 7 6 4 . 2 % ] 0.2809 29.7 0.43 Pandoraea pneumonica GCF_902459645.1 39.9 [ 3 6 . 6 4 3 . 4 % ] 0.393 1.67 25.3
[ 2 3 2 7 . 8 % ] 0.1718 35.1 [ 3 2 . 2 3 8 . 2 % ] 0.4973 Pandoraea pnomenusa GCF_000504585.2 43.6
[ 4 0 . 2 4 7 % ] 0.3588 3.78 38.2 [ 3 5 . 3 4 1 . 3 % ] 0.463 2.23 Pandoraea pulmonicola GCF_000815105.2 [ 3 7 . 9 4 4 . 8 % ] 0.3797 2.29 [ 2 4 . 2 2 9 . 1 % ] 0.163 36.6 [ 3 3 . 6 3 9 . 6 % ] 0.4809 1.64 Pandoraea soli GCF_902459595.1 39.4
[ 3 6 4 2 . 9 % ] 0.3985 1.46 [ 2 4 . 7 2 9 . 5 % ] 35.4 [ 3 2 . 4 3 8 . 4 % ] 0.4948 0.96 Pandoraea sp. XY-2 GCF_004193915.1 39.7 [ 3 6 . 3 4 3 . 1 % ] 0.3957 1.56 35.5 [ 3 2 . 6 3 8 . 6 % ] 0.4926 1.1 Pandoraea sputorum GCF_900187205.1 94.2
[ 9 1 . 7 9 6 % ] 0.0565 98.49 94 [ 9 2 . 2 9 5 . 4 % ] 0.0077 96.97 96.1 [ 9 4 . 4 9 7 . 3 % ] 0.0638 99.88 0.12 Pandoraea terrae GCF_902459695.1 18.2 [ 1 5 . 1 2 1 . 7 % ] 0.7652 0 22.6
[ 2 0 . 3 2 5 % ] 0.194 17.9 [ 1 5 . 3 2 0 . 9 % ] 0.8108 0.13 Pandoraea terrigena GCF_902459705.1 39 [ 3 5 . 6 4 2 . 4 % ] 0.403 1.31 0.1621 34.9 0.4998 0.82 Pandoraea thiooxydans GCF_001017775.3 14.2 [ 1 1 . 4 1 7 . 6 % ] 0.9145 20.2
[ 1 8 2 2 . 6 % ] 0.2177 14.4
[ 1 2 1 7 . 2 % ] 0.9331 0.54 Pandoraea vervacti GCF_000934605.2 50.9 [ 4 7 . 5 5 4 . 4 % ] 0.2999 14.26 0.1512 [ 4 1 . 1 4 7 . 2 % ] 0.4058 0.53 0.87
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