Rankings of all methods based on AUROC and AUPR.

For each of the 15 networks of the DREAM5 SYSGEN A challenge (5 for each sample size), the performance of the different methods was ranked using both the AUROC (A) and the AUPR (B). For each method, ranks are plotted horizontally across all networks. Sample sizes (number of RILs) and network complexity (number of edges) used for simulating the network are shown between the panels. While the DREAM best performer always ranks best based on the AUROC (Panel A), RF.sf+LASSO ranked first in all but one network based on AUPR (Panel B).