Motifs in 4 human TF ChIP-seq data sets.

FMotif was tested with four widely used human ChIP-seq data sets for four DNA-binding TFs including CTCF (CCCTC-binding factor [41], named CTCF()), FoxA1 (hepatocyte nuclear factor 3[42]), NRSF (neuron-restrictive silencer factor [2]), and STAT1 (signal transducer and activator of transcription protein [1]). Results from CisFinder and published motifs in literature are shown for comparison. Column definitions are the same as those in Figure 1.