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Ingenuity Pathway Analysis.

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posted on 05.09.2012, 00:35 by Suyan Tian, James G. Krueger, Katherine Li, Ali Jabbari, Carrie Brodmerkel, Michelle A. Lowes, Mayte Suárez-Fariñas

Comparison of canonical pathways overrepresented in MAD-3 transcriptome (blue bars) and Suarez-Farinas+ (red bars), which is the study with the largest sample size and number of DEG. Bars represents a –log10 transformation of the Benjamini-Hochberg adjusted p-value, which controls FDR. Only pathways with FDR<0.1 (which corresponds to 1 in the –log10 scale; represented by yellow line) in either MAD-3 or Suarez-Farinas+ are shown.