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Comparison of PAPST Derived Enhancers to the Literature.
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posted on 2015-05-13, 03:40 authored by Paul W. Bible, Yuka Kanno, Lai Wei, Stephen R. Brooks, John J. O’Shea, Maria I. Morasso, Rasiah Loganantharaj, Hong-Wei SunComparison of PAPST identified ESC enhancers with published ESC enhancers [16] shows that PAPST identified over 95% of those found by Hnisz et al. The enhancers were identified through the calculation of genomic regions co-localized by Oct4, Sox2, and Nanog.
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Peak Assignmentdomain workPAPSTgenomic regionsenhancer analysiscommand line toolsinstallation procedurescustomization featuresemPowerful Java Platformtranscription factorsonline toolscustomizable toolusability issuesResponse timesUser Friendlypurpose featuresgenomic researchLinux expertisetfcase studycommand linegenomic data analysis
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