pone.0296785.g001.tif (394.61 kB)
Summary of the steps executed by the Kuura pipeline.
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posted on 2024-01-18, 18:35 authored by Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal FeySummary of the steps executed by the Kuura pipeline.
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throughput sequencing technologiesstandard sequencing methodspipeline scripting languagekuura &# 8212quality score recalibrationconsensus call filegatk haplotypecaller wgs data ”,div >< p2 ), generatingvariant calling stepvariant recalibrationvariant consensusvariant callingvarscan strelka nextflow freebayes docker deepvariant whole exomeupdating toolstime associatedsource coderesearch gapresearch communityreference genomepublicly availableoptimal resourcesimportant featuregithub repositorygenomic sciencesfragmented toolseasily extendeddifferent projectscopious amountconfidence variantsavailable toolsalso presented
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