SPCA plots for ASV and OTU data.
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posted on 2024-12-30, 18:37 authored by Daniel Segura, Divya Sharma, Osvaldo Espin-GarciaSPCA plots for the ASV and OTU data at n = 100, processing was similar to PCA, and show similar results. Sub samples were selected using similar methodology as for PCA using the SPCA results.
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precise microbe identificationdimension reduction techniquesassess differential representation16s ribosomal rnasample sizes comparedsample diversity informationcomparing subsampling strategiesusing asvs insteadused 199 samplesphase metagenomic studiesotus typically leadallergic individuals acrosssubsampling methods evaluatedshotgun metagenomic sequencinggut microbiome datagenerated subsamples basedsubsampling strategiesoverall samplemicrobiome databiological diversityphase 2phase 1subsample basedmetagenomic analysisxlink ">similar resultsprecision medicineotus ).microbiome fieldkey componentincreasingly regardedhuman healthhigh costgenerate asvsexpression levelsdone costdiabimmune projectbiomarkers discoveredasvs ),
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