Public Library of Science
Browse

RNA sequencing data.

Download (38.99 MB)
figure
posted on 2021-11-30, 18:34 authored by Manvi Goel, Angel M. Aponte, Graeme Wistow, Tudor C. Badea

RNA sequencing data showing FPKM (fragments per kilobase of transcripts per million mapped reads) Map1b, Stx1b; 14-3-3 family- Ywhab, Ywhaz, Ywhae, Ywhag, Ywhaq; SV2a; Bicd2; Pitpnm2, Sptbn1 and Mycbp2invisualbrain areas (MTN:medial temporal nucleas, OPN:olivary pretectal nucleas, SC:superiorcoliculus, LGN: Lateral geniculate nucleas), rest of the brain (Brain) Brn3a wild-type (WT) and knockout (KO) RGCs, Brn3b WT and KO RGCs and rest of the retina (Retina). Brain samples were obtained from P3 WT (wildtype) mice and retina samples from P3 or E15 mice. The genotypes for retina RGC samples are: Brn3b WT = Pax6α:Cre; Brn3bCKOAP/WT, Brn3b KO = Pax6α:Cre; Brn3bCKOAP/KO, Brn3a WT = Pax6α:Cre; Brn3aCKOAP/WT, Brn3a KO = Pax6α:Cre; Brn3aCKOAP/KO. Values for brain areas represent medians for three samples (LGN, SC), two samples (whole brain) or individual samples pooled from three animals (MTN and PTA). Retina values represent samples obtained from two pooled retinas, while RGC values are medians of two biological replicates each obtained from 6–8 retinas. Data is extracted from Sajgo et al., 2017[10].

(TIF)

History