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Phylogeny inference Phasi Charoen-like phasivirus (PCLV) based on its three genomic segments (S, M and L).

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posted on 2025-01-10, 20:21 authored by Lucas Ripoll, Javier Iserte, Carolina Susana Cerrudo, Damian Presti, José Humberto Serrat, Ramiro Poma, Federico Alejandro Javier Mangione, Gabriela Analía Micheloud, Verónica Viviana Gioria, Clara Inés Berrón, M. Paola Zago, Cristina Borio, Marcos Bilen

Maximum-likelihood tree based on the nucleotide sequences of full-length S (Panel A), M (Panel B) and L (Panel C) genomic segments of PCVL virus. Prototypes and sequences obtained in this work were used. Each virus is identified by the genome ID (Genbank), the name of the virus with its corresponding strain or isolate, and the country of origin in parentheses. The three Argentine PCLV isolations, identified in this study, are in red. Bootstrap values greater than 50 are indicated. Maximum-likelihood phylogenetic tree was inferred using the GTR+F+R2 model and 1000 replicates in every case.

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