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Phylogenetic analysis based on 37 partial DNA Polymerase amino acid sequences of herpesviruses from several vertebrate species.

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posted on 2020-04-17, 17:26 authored by F. A. Abade dos Santos, M. Monteiro, A. Pinto, C. L. Carvalho, M. C. Peleteiro, P. Carvalho, P. Mendonça, T. Carvalho, M. D. Duarte

The access number of the nucleotide sequences from which the amino acid sequences were deduced are given. The tree with the highest log likelihood (-2432.55) is shown. The LG+G+I model considering 5 categories, [+G] parameter of 0,9929 and [+I] of 11,47% sites was used. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. There were a total of 60 positions in the final dataset. Robustness of the tree nodes was assessed by bootstrapping 1000 times. Only bootstrap values ≥70 are shown. The evolutionary analyses were conducted in MEGA X [18] and the phylogenetic tree was edited in the Figtree software version 1.4.0.

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