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Mean actual observed zygosity of OCI-AML3 cells compared to zygosity predicted from variant allele frequency.

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posted on 2018-05-02, 17:37 authored by Alison M. Thompson, Jordan L. Smith, Luke D. Monroe, Jason E. Kreutz, Thomas Schneider, Bryant S. Fujimoto, Daniel T. Chiu, Jerald P. Radich, Amy L. Paguirigan

Colored bars represent the mean zygosity frequency measured in single cells (847 single-cell measurements total). White bars with black outline represent the predicted mean zygosity frequency we expect our method to report for a sample for which all single cells are heterozygous. Actual genotype data is for N = 12 arrays of OCI-AML3 cells. Predicted genotype data is from measurements of single plasmids with one copy of each wild-type and mutant allele. Predicted genotype data are for N = 6 arrays of these heterozygous plasmids. In each case, genotype frequencies were quantified in each array; reported means were calculated between arrays. Error bars represent standard deviations of these measurements.

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