Heat map of relative synonymous codon usage (RSCU) for start, middle, and end 30 CDS (coding sequence) codons ending in pyrimidine (C and T) from different soybean gene groups.
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posted on 2017-11-16, 18:56 authored by Thiago J. Nakayama, Fabiana A. Rodrigues, Norman Neumaier, Juliana Marcolino-Gomes, Hugo B. C. Molinari, Thaís R. Santiago, Eduardo F. Formighieri, Marcos F. Basso, José R. B. Farias, Beatriz M. Emygdio, Ana C. B. de Oliveira, Ângela D. Campos, Aluízio Borém, Frank G. Harmon, Liliane M. Mertz-Henning, Alexandre L. NepomucenoThe groups are formed by top 40 and 500 ranked up- (U), down-regulated (D), and stable-genes (S) to hypoxia, and genome (G). Asp, Cys, Tyr, His, Phe, and Asn are coding by 2-fold degenerate pyrimidine ending codons. Heat map of RSCU for all 59 synonymous codons including for whole CDS extension is provided in Fig E in S1 Supporting Information.
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flood-tolerant Embrapa 45hypoxic stress conditionshypoxiaCRTABAflood-sensitive BR 4 soybean cultivarsendoplasmic reticulum stressroot transcriptional responsesGlyma 10g RNA-seqN-terminal protein myristoylationGlyma 06g protein suppressoroxygen deficiencygene groupspromoter TATA boxABREsoybean transcriptome reconfiguration
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