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Genotyping and verifying mpx-null zebrafish larvae.

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posted on 2019-04-19, 17:36 authored by Kyle D. Buchan, Tomasz K. Prajsnar, Nikolay V. Ogryzko, Nienke W. M. de Jong, Michiel van Gent, Julia Kolata, Simon J. Foster, Jos A. G. van Strijp, Stephen A. Renshaw

A) Diagram of a WT (mpxwt) and mutated (mpxNL144) gene, showing the BtsCI restriction site cutting only the mutated mpxNL144 gene. B) PCR amplification of the mpx gene from the genomic DNA of mpxwt, mpxwt/NL144 and mpxNL144 fish–fragment 312bp; control DNA is a positive control from a separate genotyping experiment. Hyperladder 1kb. C) Diagnostic digest of the PCR product from mpxwt, mpxwt/NL144 and mpxNL144 fish. Band sizes: mpxwt- 312bp, mpxNL144- 230bp, mpxwt/NL144- 312bp and 230bp. Hyperladder 100bp plus. D) DNA sequencing of the PCR products to confirm the accuracy of the BtsCI digest. E) mpxwt, mpxNL144 and mpxwt/NL144 larvae fixed at 4dpf and stained with Sudan Black B. Larvae with at least one functional mpx allele stained (57/58 mpxwt, 20/20 mpxwt/NL144) and larvae that do not produce Mpx did not stain (32/32 mpxNL144). Inset shows an enlarged view of the region indicated by the dashed white box. Scale bar = 200μm.

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