Discrimination of RNAseq reads originating from Fv1 and Fv7.

Regions of alignments of consensus pileups for reads from ERP023198 and ERP005559 aligning to Fv1CAR1 and Fv7CAR1, the alleles of Fv1 and Fv7 found in CAROLI/EiJ, along with these two known sequences for reference. Regions are centered around bases that discriminate Fv1 from Fv7. Due to the low coverage, not all areas of the genes are covered by consensus pileups, as indicated by alignment gaps (‘–’).