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Comparison of differentially expressed genes by Cufflink and DESeq analysis tool.

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posted on 2016-11-11, 17:35 authored by Richa Rai, Sudhir Kumar Chauhan, Vikas Vikram Singh, Madhukar Rai, Geeta Rai

Venn diagram shows the intersection of the DEGs obtained from Cufflink and DESeq analysis and DEGs that were obtained from either Cufflink or DESeq only. Text in green shows number of upregulated DEGs whereas, text in red represents number of DEGs downregulated in each case A. Comparison in anti-dsDNA+ B. Comparison in anti-dsDNA+ENA+ C. Comparison in anti-ENA+

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    SLE patients categorisedSLE patientsIPAautoantibody specificitiesSLE patients subsetsSystemic Lupus Erythematosus Patientsanti-dsDNADistinct Autoantibody SpecificitiesSLE subsetstranscriptome expression patterningenuity pathway analysisthroughput sequencing technologiesgranulocyte gene signatureUnique Transcriptome SignaturesENA

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