Circular genome mapping of the UY1PSABAL and UY1PSABAL2.
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posted on 2020-09-04, 17:24 authored by Estelle Longla Madaha, Charlotte Mienie, Hortense Kamga Gonsu, Rhoda Nsen Bughe, Marie Christine Fonkoua, Wilfred Fon Mbacham, Kazeem Adekunle Alayande, Carlos Cornelius Bezuidenhout, Collins Njie AtebaThe circular genome was generated with PATRIC sever v3.6.2.
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PATRIC annotation pipelinesiron uptake activityAntiSMASH v .5.0. Clustered Regular...FastQC v .0.11.5Comprehensive Antibiotic Resistance...Illumina Miseq platformtype III secretion systemsRASTPseudomonas aeruginosa strains UY 1...PATRIC annotation tool v .3.6.2. An...β- lactamines resistance genes blaPAOresistance genes harbouredPHASTERUY 1PSABALTrimmomatic v .0.36.harbouring virulence markersmethylation enzyme rmtBUY 1PSABAL strainsMDRProkka v .2.1.1 annotation pipelineaeruginosa UY 1PSABALSPAdes v .3.13fosfomycine resistance gene fosAgenomecas genes regionsciprofloxacin-modifying enzyme crpPCRISPRtype IV piliTool Enhanced Release
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