pone.0220182.g002.tif (268.53 kB)
2D PCA of the space of the embedded vectors representing the single residues.
figure
posted on 2019-08-15, 17:41 authored by Claudio Mirabello, Björn WallnerIn this example, we show the embedding outputs of a simpler network where the original space has a dimensionality of four. The residues that are closest (lower cosine between the 4D vectors) to (a) lysine and (b) tryptophan are colored (the closer the residue, the darker the hue).