Table_2.xls (13.5 kB)
Structural features of species-specific transposable element insertions in ca. 5.7 Mb of orthologous genomic sequences from the coelacanth species Latimeria chalumnae and L. menadoensis.
dataset
posted on 2014-12-03, 02:47 authored by Magali Naville, Domitille Chalopin, Jean-Nicolas VolffORF = Open Reading Frame; L. ch. = Latimeria chalumnae; L. me. = Latimeria menadoensis; IGR = Intergenic Region; RT = Reverse Transcriptase; APE = Apurinic/Apyrimidic Endonuclease; LTR = Long Terminal Repeat; ND = Not Detected; TSD = Target Site Duplication; *Number of BlastN hits in the analyzed regions, with hit length ≥80% of insertion length and identity ≥80%, criteria that are classically used to define TE families; ** Number of BlastN hits against L. menadoensis testis transcriptome with hit length ≥80 nt and identity ≥95%.
Structural features of species-specific transposable element insertions in ca. 5.7 Mb of orthologous genomic sequences from the coelacanth species Latimeria chalumnae and L. menadoensis.