Reads after basecalling, demultiplexing and filtering against rRNA, Aedes aegypti AaegL5.0 and Homo sapiens genome databases: Total reads in each sample after sequencing and demultiplexing.
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posted on 2025-01-10, 20:21 authored by Lucas Ripoll, Javier Iserte, Carolina Susana Cerrudo, Damian Presti, José Humberto Serrat, Ramiro Poma, Federico Alejandro Javier Mangione, Gabriela Analía Micheloud, Verónica Viviana Gioria, Clara Inés Berrón, M. Paola Zago, Cristina Borio, Marcos BilenAfter using BLASTN against the viral database each read making viral hit was counted.
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three distinct regionsprevent arbovirus outbreakshumaita tubiacanga virusdiv >< pdeveloping novel strategiesanalysis pipeline basedaedes aegypti viral sequences enrichedsanta fe provincemedically significant virusesviral surveillancenorthern provinceviruses circulatingspecific virusesuseful tooltransmitting diseasesprimary vectorslike phasivirushigh impactfull genomecrucial toolcould promoteborne pathogensarboviral detectionanimal health
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