Diploid Cluster file (EGT format of Illumina GenomeStudio™ 2.0 software) for the EucHIP60K Infinium assay for Psidium sp. genotyping.
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posted on 2022-11-02, 17:31 authored by Carlos Antonio Fernandes Santos, Soniane Rodrigues da Costa, Leonardo Silva Boiteux, Dario Grattapaglia, Orzenil Bonfim Silva-JuniorCluster positions were derived from a set of 70 diverse samples of Psidium guajava, Psidium guineensis and their F1 hybrids using the GenTrain algorithm. It corresponds to the SNP data from the 14,268 successful reallocated probesets onto the P. guajava assembly while the remaining SNP data were “zeroed”. This file is provided to help processing and quality control of SNP data for future Psidium sp. genotyping using the EucHIP60K.
(EGT)
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yet untapped supplysyntenic path approachsuccessfully transferred 14significantly associated lociroot knot nematodemodern breeding practicemarker assisted introgression268 snp probesetsmeloidogyne enterolobii improved guava cultivarsgenomes across generadiv >< pde novo resistance loci mappedpsidium guajava eucalyptus grandis genome built usingpsidium p eucalyptus using crossguineense guava (<genera snpswild relativetwo snpstropics ”,sp .)phytohormone homeostasisoutstanding diversitynutritional valuenucleotide levelmirna pathwaymineral nutrientsindirect supportgenomic resourcesgenomic regiongenetics standpointgenetic associationsfunctional annotationevolutionary conservationdisease onsetconceivably triggeredcomparative genomicschromosome 3challenges arisingbarely developed
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