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De Novo Transcriptomes of Forsythia koreana Using a Novel Assembly Method: Insight into Tissue- and Species-Specific Expression of Lignan Biosynthesis-Related Gene - Fig 7
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posted on 2016-10-21, 17:30 authored by Akira Shiraishi, Jun Murata, Erika Matsumoto, Shin Matsubara, Eiichiro Ono, Honoo Satake(A) Gene expression in callus and leaf. Contigs upregulated in callus, contigs upregulated in leaf, and contigs with no differential expression are plotted in yellow, blue and green, respectively. (B) Phylogenetic tree of UGT-like sequences. The color of the boxes beside each contig indicates the log ratios of the FPKM values of callus and leaf. FPKM, fragment per kilobase of transcript per million mapped reads.
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gene ontologygene clustersTrinity-based contigsIllumina HiSeq 1500 platformsecoisolariciresinol dehydrogenaseexpression profilesphylogenetic analysesphylogenetic cluster analysestranscriptome datalignan biosynthesisNovel Assembly Methodmatairesinol-glucosylating enzymeswoody plantsSpecies-Specific ExpressionCYP 71BEantitumor drugslignan contentsSIRDLignan Biosynthesis-Related Gene Forsythia sppenzyme geneForsythia koreanapodophyllotoxin biosynthesisprimer-based sequence reassemblyForsythia koreana leaflignan-biosynthetic enzyme genessequence similarityLinum flavumlayout consensus-based procedurebiosynthetic pathwaysPodophyllum hexandrumORFplant lineage-specific gene clustersVP-seq analysislignan-rich plantslignan biosynthetic pathwaysLinum usitatissimumreading frameslifestyle-related diseasescallus transcriptomeDe Novo TranscriptomesChinese medicines
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