Venn diagrams of the number of SNPs identified in each dataset and with the respective bioinformatics pipeline.

(a) SNPs identified with the SAMtools pipeline across all three platforms. (b) SNPs identified with the TASSEL pipeline across all three platforms. (c) SNPs identified in the HiSeq2000 data with both pipelines. (d) SNPs identified in the PGM data with both pipelines. (e) SNPs identified in the Proton data with both pipelines.