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The relative performance of PWMs and DWMs in predicting binding targets in yeast.

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posted on 2010-03-22, 02:15 authored by Rahul Siddharthan

The figure shows Pearson correlation coefficients of binding site predictions with ChIP binding -values reported by Harbison et al.. [19], using the “raw” position weight matrices from MacIsaac et al.. [20], dinucleotide weight matrices with the same “width” as the “raw” matrices, and dinucleotide weight matrices with a 10bp “flanking sequence” on either side of the input matrices. Details are in Materials and Methods.

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