Fig_2.tif (1.87 MB)
SCERNA Flowchart.
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posted on 2016-01-18, 14:26 authored by Loren A. Honaas, Eric K. Wafula, Norman J. Wickett, Joshua P. Der, Yeting Zhang, Patrick P. Edger, Naomi S. Altman, J. Chris Pires, James H. Leebens-Mack, Claude W. dePamphilisSCERNA stands for Scaffolding and Error correction for de novo assemblies of RNA-Seq data. This collection of post-processing tools allows flexible implementation at various steps post assembly and with multiple assemblers and data types.
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assemblerbenchmark Illumina transcriptome dataSCERNAOryza sativa transcriptomesArabidopsis leaf transcriptome99 transcriptome assembliesLessons Learnedtranscriptome assembly strategiesArabidopsis thalianachimeric assembliesabundance transcriptsclcNormalized librariesassembly improvementSuperior De Novo Transcriptome AssembliesControlled analysestranscriptome assemblieslack 1000Plant GenomeArabidopsis genes
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