Plasmid alignment of pCLL (C. botulinum strain Eklund 17B), pCW3 (C. perfringens strain CW92), contigs 1108490430999 and 1108490430283 (C. perfringens type D strain JGS1721) and pCP8533etx (C. perfringens type B strain NCTC8533B4D).

The alignment has five panels, one for each plasmid. The top portions of the panels are composed of colored segments corresponding to the boundaries of locally collinear blocks (LCBs) with lines connecting the homologous blocks in each plasmid. LCBs below a plasmid's center line are in the reverse complement orientation relative to the reference plasmid (pCLL).