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Calculated and experimental mutational energies (kcal/mol) of the receptor mutants.

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posted on 2011-03-03, 01:31 authored by Rilei Yu, David J. Craik, Quentin Kaas
a

Distance dependent dielectric constant minimization (DDDCM). The standard deviations of the mutational energies were computed using 15 frames.

b

Explicit water minimization (EWM). The standard deviations of the mutational energies were computed using 15 frames.

c

Experimental mutational energies (EXP) that were derived from experimental Kd values [26][28] using the equation ΔΔGbinding  =  EXP  =  −RT ln[Kd (mutant)/Kd (wild-type)] at 298 K.

d

Mutational energy computed using molecular mechanics generalized Born (GB) surface area (MM-GB/SA) at 298 K.

e

Mutational energy computed using molecular mechanics Poisson-Boltzmann (PB) surface area (MM-PB/SA) at 298 K.

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