Bootscan analysis with recombinant CMV isolates as the query sequences.

Query sequences included (a) BORU93, (b) HORU94, (c) V154NYT85, and (d) AORU93 which are illustrated on the upper portion of the figures. Sequences compared with the query sequences are indicated in the legend. Analysis was performed with a sliding window of 200 bp and a step size of 20 bp. The Y-axis illustrates the percentage of permuted trees in which each selected isolate clustered with the query sequence. The 70% cutoff level, representing possible recombination, is indicated by the dashed line.