pcbi.1006498.g001.tif (444.43 kB)
Overview of the FLEA pipeline, broken into conceptual sub-pipelines.
figure
posted on 2018-12-13, 18:56 authored by Kemal Eren, Steven Weaver, Robert Ketteringham, Morné Valentyn, Melissa Laird Smith, Venkatesh Kumar, Sanjay Mohan, Sergei L. Kosakovsky Pond, Ben MurrellThe Quality and Consensus sub-pipelines process each time point separately. Duplicate steps in other time points are grayed out. CCS stands for “circular consensus sequences”; QCS for “quality-controlled sequences”, and HQCS for “high-quality consensus sequences”.
History
Usage metrics
Categories
Keywords
dynamicalignmentvisualizationHIV vaccine studieslong-read sequencing datatime series plotsclient-side web applicationP 018 resultssequenceHQCSpipelineFull-Length Envelope AnalyzerHIV env populationsprocess Pacific Biosciences HIV env datahttpPython source codeFASTQFLEAlong-read sequencinganalysisphylogenetic tree browser
Licence
Exports
RefWorks
BibTeX
Ref. manager
Endnote
DataCite
NLM
DC