ML phylogeny of chlorophytes inferred using the amino acid and nucleotide data sets assembled from 79 protein-coding genes.

The best-scoring RAxML tree inferred from the amino acid (PCG-AA) data set under the GTR+Γ4 model is presented. Bootstrap support (BS) values are reported on the nodes: from top to bottom or left to right, are shown the values for the analyses of the PCG-AA and the nucleotide PCG123degen and PCG12 data sets. A black dot indicates that the corresponding branch received a BS value of 100% in all three analyses; a dash represents a BS value < 50%. The scale bar denotes the estimated number of amino acid substitutions per site.