Haplotypes exhibiting missing or deficit homozygosity.

<p>Table shows five loci exhibiting missing or deficit homozygosity on the Sscrofa11.1 genome build, four in the Landrace population (LA1-4), and one in the Duroc population (DU1). The table shows the genomic location, carrier frequency, and deficit of homozygosity for each haplotype. The deficit of homozygosity is calculated based on trio information (parents and offspring) with the formula described by Fritz et al., 2013 [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1008055#pgen.1008055.ref020" target="_blank">20</a>], and from haplotype frequency, using the Hardy-Weinberg principle. Genotyped progeny is derived from CxC matings.</p>