Table 2.xls (9.5 kB)
Comparison of SNP-counting methods for simulated samples grouped by the genome used for simulation.
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posted on 2019-12-09, 18:31 authored by Christine Jandrasits, Stefan Kröger, Walter Haas, Bernhard Y. RenardComparison of SNP-counting methods for simulated samples grouped by the genome used for simulation.
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pairwise SNP-distancepan-genome mappingtransmission surveillancedetectionMycobacterium tuberculosis transmission clusters Next-generation sequencingPANPASCOComputational pan-genome mappingsampleusageapproachwhole-genome sequencingdatasetpairwise distance methodintegral complementinvestigationdisease outbreaksscenariocharacteristicbase-by-base distance measuresanalysisMycobacterium tuberculosis lineagesreference genomesregion
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