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Bacteria associated with progression to CIN2+ identified using LEfSe.

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posted on 2020-03-26, 17:25 authored by Mykhaylo Usyk, Christine P. Zolnik, Philip E. Castle, Carolina Porras, Rolando Herrero, Ana Gradissimo, Paula Gonzalez, Mahboobeh Safaeian, Mark Schiffman, Robert D. Burk

HR-HPV bacterial biomarkers for visit 1 (panel A) and visit 2 (panel B), comparing clearance vs. progression, were identified using the LEfSe tool. Only the significant bacterial taxa (LDA>2.0) are shown for both visits.

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    PLOS Pathogens

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    V 216 S V 4 rRNA gene regionHPV infections progressIllumina MiSeq platformincident HR-HPV infectionstudy Background Human papillomavirusincident HR-HPV infectionsLDAV 1 GardnerelladiversityHR-HPV progressionCell Motility pathwayQIIME 2. Functional groupsCINCVMCosta Rica HPV Vaccine TrialV 1 genus Lactobacilluscervicovaginal microbiomeLinear Discriminant AnalysisNCTOTU

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