Mirabello, Claudio Wallner, Björn 2D PCA of the space of the embedded vectors representing the single residues. <p>In this example, we show the embedding outputs of a simpler network where the original space has a dimensionality of four. The residues that are closest (lower cosine between the 4D vectors) to (a) lysine and (b) tryptophan are colored (the closer the residue, the darker the hue).</p> inter-residue contact maps;rawMSA;pre-calculated features;End-to-end Deep Learning;sequence profiles;PSSM;CASP;Multiple Sequence Alignments;machine learning-based methods;way proteins function;MSA;inter-residue contact map prediction category;dataset generation code 2019-08-15
    https://plos.figshare.com/articles/figure/2D_PCA_of_the_space_of_the_embedded_vectors_representing_the_single_residues_/9635342
10.1371/journal.pone.0220182.g002