%0 Figure %A Eren, Kemal %A Weaver, Steven %A Ketteringham, Robert %A Valentyn, Morné %A Smith, Melissa Laird %A Kumar, Venkatesh %A Mohan, Sanjay %A L. Kosakovsky Pond, Sergei %A Murrell, Ben %D 2018 %T Overview of the FLEA pipeline, broken into conceptual sub-pipelines. %U https://plos.figshare.com/articles/figure/Overview_of_the_FLEA_pipeline_broken_into_conceptual_sub-pipelines_/7464347 %R 10.1371/journal.pcbi.1006498.g001 %2 https://plos.figshare.com/ndownloader/files/13823486 %K dynamic %K alignment %K visualization %K HIV vaccine studies %K long-read sequencing data %K time series plots %K client-side web application %K P 018 results %K sequence %K HQCS %K pipeline %K Full-Length Envelope Analyzer %K HIV env populations %K process Pacific Biosciences HIV env data %K http %K Python source code %K FASTQ %K FLEA %K long-read sequencing %K analysis %K phylogenetic tree browser %X

The Quality and Consensus sub-pipelines process each time point separately. Duplicate steps in other time points are grayed out. CCS stands for “circular consensus sequences”; QCS for “quality-controlled sequences”, and HQCS for “high-quality consensus sequences”.

%I PLOS Computational Biology