10.1371/journal.pone.0184471.g002
David J. Schultz
David J.
Schultz
Penn Muluhngwi
Penn
Muluhngwi
Negin Alizadeh-Rad
Negin
Alizadeh-Rad
Madelyn A. Green
Madelyn A.
Green
Eric C. Rouchka
Eric
C. Rouchka
Sabine J. Waigel
Sabine J.
Waigel
Carolyn M. Klinge
Carolyn
M. Klinge
Enrichment analysis of miRNA-seq data.
Public Library of Science
2017
SIN
breast cancer cells MicroRNAs
MYC
TNBC
genome-wide microRNA transcriptome
MetaCore Gene Ontology
cell lines
VIM mRNA transcript expression
ER
miR -20b
Whole genome expression
69 AnAc-responsive miRNAs
MCF -7 cells
AnAc-treated MDA-MB -231 cells
breast cancer
AnAc-treated MCF -7 cells
miRNA arm preference
miR -20b target EFNB 2 transcript levels
PPAR
MCF -7 estrogen receptor α
B cell receptor
IC
Genome-wide miRNA response
MDA-MB -231 cells
2017-09-08 18:05:36
Figure
https://plos.figshare.com/articles/figure/Enrichment_analysis_of_miRNA-seq_data_/5391823
<p>Differentially expressed genes were identified in pairwise comparisons: MCF-7 AnAc vs. MDA-MB-231 AnAc using the tuxedo suite of programs including cufflink-cuffdiff2. The Venn diagrams show the number of common and differentially expressed genes significantly downregulated (A) and upregulated (B). Pathway analysis was performed using GeneGo Pathways Software (MetaCoreTM). The pathways identified for each comparison are listed in the order provided by MetaCoreTM analysis.</p>