A. Hippmann, Anna Schuback, Nina Moon, Kyung-Mee P. McCrow, John E. Allen, Andrew Foster, Leonard J. R. Green, Beverley T. Maldonado, Maria Phylogenetic tree of 48 predicted LHCs from the <i>T</i>. <i>oceanica</i> genome (CCMP 1005) aligned with 41 LHCs from <i>T</i>. <i>pseudonana</i> (CCMP 1335). <p>Boxed THAOC LHCs have been identified at the protein level in this study. LHCs in grey shaded boxes with bold, black letters are significantly down-regulated and those in black shaded boxes with bold, white letters are significantly up-regulated in response to low Cu in TO03. The only significantly regulated LHC in TO05 is THAOC_08587 (up), which aligns closest to TpFCP7 (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0181753#pone.0181753.t002" target="_blank">Table 2</a>). Numbers on nodes are based on PhyML alertSH, aBayes, and standard bootstrap (100 replicates) and are expressed as percentages. Bootstrap values below 65% are not shown.</p> LHC;NPQ;carbon fixation;PSI;PSII;reactive oxygen species;photosynthetic electron transport chain;ETC;cytochrome b 6 f;CCMP 1005 decreases;ocean diatom Thalassiosira oceanica;Fe;Cu-containing photosynthetic electron carrier plastocyanin;intra-specific strain differences;photosynthetic apparatus;48 light harvesting;protein;growth rate;cyt b 6 f;II;response;diatom Thalassiosira oceanica;oxygen evolution 2017-08-24
    https://plos.figshare.com/articles/figure/Phylogenetic_tree_of_48_predicted_LHCs_from_the_i_T_i_i_oceanica_i_genome_CCMP_1005_aligned_with_41_LHCs_from_i_T_i_i_pseudonana_i_CCMP_1335_/5343445
10.1371/journal.pone.0181753.g005