10.1371/journal.pone.0176067.g004
Gemma Navarro
Gemma
Navarro
Eva Martínez-Pinilla
Eva
Martínez-Pinilla
Alejandro Sánchez-Melgar
Alejandro
Sánchez-Melgar
Raquel Ortiz
Raquel
Ortiz
Véronique Noé
Véronique
Noé
Mairena Martín
Mairena
Martín
Carlos Ciudad
Carlos
Ciudad
Rafael Franco
Rafael
Franco
Network analysis using STRING.
Public Library of Science
2017
glioma cell line
resveratrol
plakophilin 4 up-regulation
Vamp 2
dynamin 1 mRNA
control diet
synaptic vesicle transport
glia gene expression
Atp
2017-04-25 18:27:22
Figure
https://plos.figshare.com/articles/figure/Network_analysis_using_STRING_/4909247
<p>The list of differentially expressed genes in neocortex after RSV diet was subjected to Network analysis using the STRING software as described in Methods. Square interaction score was set at medium confidence (0.4; scores range from highest, 0.9, to low, 0.15, confidence). Other selected parameters were: average node degree: 1.12, local clustering coefficient: 0.32 and active interaction sources including: text mining, experiments, databases, co-expression, neighborhood, gene fusion and co-occurrence. Moreover, no restrictions were forced in the number of interactions to show. Overexpressed genes are shown within red rectangles. The colors of the edges represent the different types of protein associations, either from known or predicted interactions: from curated databases (blue), experimentally determined (magenta), text mining (green) and co-expression (black).</p>