<i>De Novo</i> Transcriptomes of <i>Forsythia koreana</i> Using a Novel Assembly Method: Insight into Tissue- and Species-Specific Expression of Lignan Biosynthesis-Related Gene - Fig 7
Akira Shiraishi
Jun Murata
Erika Matsumoto
Shin Matsubara
Eiichiro Ono
Honoo Satake
10.1371/journal.pone.0164805.g007
https://plos.figshare.com/articles/figure/_i_De_Novo_i_Transcriptomes_of_i_Forsythia_koreana_i_Using_a_Novel_Assembly_Method_Insight_into_Tissue-_and_Species-Specific_Expression_of_Lignan_Biosynthesis-Related_Gene_-_Fig_7/4053051
<p><b>(A) Gene expression in callus and leaf.</b> Contigs upregulated in callus, contigs upregulated in leaf, and contigs with no differential expression are plotted in yellow, blue and green, respectively. <b>(B) Phylogenetic tree of UGT-like sequences.</b> The color of the boxes beside each contig indicates the log ratios of the FPKM values of callus and leaf. FPKM, fragment per kilobase of transcript per million mapped reads.</p>
2016-10-21 17:30:01
gene ontology
gene clusters
Trinity-based contigs
Illumina HiSeq 1500 platform
secoisolariciresinol dehydrogenase
expression profiles
phylogenetic analyses
phylogenetic cluster analyses
transcriptome data
lignan biosynthesis
Novel Assembly Method
matairesinol-glucosylating enzymes
woody plants
Species-Specific Expression
CYP 71BE
antitumor drugs
lignan contents
SIRD
Lignan Biosynthesis-Related Gene Forsythia spp
enzyme gene
Forsythia koreana
podophyllotoxin biosynthesis
primer-based sequence reassembly
Forsythia koreana leaf
lignan-biosynthetic enzyme genes
sequence similarity
Linum flavum
layout consensus-based procedure
biosynthetic pathways
Podophyllum hexandrum
ORF
plant lineage-specific gene clusters
VP-seq analysis
lignan-rich plants
lignan biosynthetic pathways
Linum usitatissimum
reading frames
lifestyle-related diseases
callus transcriptome
De Novo Transcriptomes
Chinese medicines