<i>De Novo</i> Transcriptomes of <i>Forsythia koreana</i> Using a Novel Assembly Method: Insight into Tissue- and Species-Specific Expression of Lignan Biosynthesis-Related Gene - Fig 7 Akira Shiraishi Jun Murata Erika Matsumoto Shin Matsubara Eiichiro Ono Honoo Satake 10.1371/journal.pone.0164805.g007 https://plos.figshare.com/articles/figure/_i_De_Novo_i_Transcriptomes_of_i_Forsythia_koreana_i_Using_a_Novel_Assembly_Method_Insight_into_Tissue-_and_Species-Specific_Expression_of_Lignan_Biosynthesis-Related_Gene_-_Fig_7/4053051 <p><b>(A) Gene expression in callus and leaf.</b> Contigs upregulated in callus, contigs upregulated in leaf, and contigs with no differential expression are plotted in yellow, blue and green, respectively. <b>(B) Phylogenetic tree of UGT-like sequences.</b> The color of the boxes beside each contig indicates the log ratios of the FPKM values of callus and leaf. FPKM, fragment per kilobase of transcript per million mapped reads.</p> 2016-10-21 17:30:01 gene ontology gene clusters Trinity-based contigs Illumina HiSeq 1500 platform secoisolariciresinol dehydrogenase expression profiles phylogenetic analyses phylogenetic cluster analyses transcriptome data lignan biosynthesis Novel Assembly Method matairesinol-glucosylating enzymes woody plants Species-Specific Expression CYP 71BE antitumor drugs lignan contents SIRD Lignan Biosynthesis-Related Gene Forsythia spp enzyme gene Forsythia koreana podophyllotoxin biosynthesis primer-based sequence reassembly Forsythia koreana leaf lignan-biosynthetic enzyme genes sequence similarity Linum flavum layout consensus-based procedure biosynthetic pathways Podophyllum hexandrum ORF plant lineage-specific gene clusters VP-seq analysis lignan-rich plants lignan biosynthetic pathways Linum usitatissimum reading frames lifestyle-related diseases callus transcriptome De Novo Transcriptomes Chinese medicines