2D PCA of the space of the embedded vectors representing the single residues.

2019-08-15T17:41:03Z (GMT) by Claudio Mirabello Björn Wallner

In this example, we show the embedding outputs of a simpler network where the original space has a dimensionality of four. The residues that are closest (lower cosine between the 4D vectors) to (a) lysine and (b) tryptophan are colored (the closer the residue, the darker the hue).