10.1371/journal.pone.0148934.g004
Monique Turmel
Monique
Turmel
Jean-Charles de Cambiaire
Jean-Charles
de Cambiaire
Christian Otis
Christian
Otis
Claude Lemieux
Claude
Lemieux
Extent of rearrangements between the <i>Scherffelia</i> and <i>Tetraselmis</i> chloroplast genomes.
Public Library of Science
2016
trebouxiophycean chloroplast genomes
streptophyte chloroplast genomes
core chlorophytes
Chlorodendrophyceae
CCMP
gene order data support
region
SSC
chloroplast phylogenomic analyses
Chlorodendrophycean Green Algae Scherffelia dubia
Pedinophyceae
Tetraselmis sp
IR
core Chlorophyta
2016-02-05 19:36:25
Figure
https://plos.figshare.com/articles/figure/Extent_of_rearrangements_between_the_i_Scherffelia_i_and_i_Tetraselmis_i_chloroplast_genomes_/2596450
<p>These genomes were aligned using Mauve 2.3.1. Only one copy of the IR (pink boxes) is shown for each genome. The blocks of colinear sequences containing two or more genes are numbered as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0148934#pone.0148934.g001" target="_blank">Fig 1</a>. Gene clusters 5 and 6 were retrieved as a single locally colinear block because their very small sizes did not allow them to be resolved in Mauve. Conversely, the gene cluster spanning the LSC/IR junction (cluster 1) was fragmented into three colinear blocks in Mauve because only one copy of the IR was included in this analysis and also because the two genomes were treated as linear instead of circular molecules (the genomes were linearized at the LSC/IR junction).</p>