J. Gaffney, Daniel McVicker, Graham A. Pai, Athma N. Fondufe-Mittendorf, Yvonne Lewellen, Noah Michelini, Katelyn Widom, Jonathan Gilad, Yoav K. Pritchard, Jonathan Arrays of positioned nucleosomes flanking transcription factor (TF) binding sites. <p>A. Heatmaps of MNase midpoints (columns 1–2) and DNase I cuts (column 3) surrounding 1000 randomly sampled ChIP-seq peaks for CTCF, NF-kB, Irf4, GABP and C-fos. Heatmap rows are ordered from top to bottom by the nucleosome array log likelihood ratio (LLR). Columns 2 and 3 are aligned according to the most likely location of the upstream and downstream arrays of positioned nucleosomes. B. Aggregate MNase midpoint and DNase I cutsite depths across all regions and for the subset of regions with LLR>500.</p> positioned;nucleosomes;flanking;transcription;binding 2012-11-15
    https://plos.figshare.com/articles/figure/_Arrays_of_positioned_nucleosomes_flanking_transcription_factor_TF_binding_sites_/212292
10.1371/journal.pgen.1003036.g004