Inferred homing sites for <i>Kl.pn</i>.I5, <i>Di.ze</i>.I1, <i>So.gl</i>.I1, and c-<i>Ha.de</i>.I1 introns. LeclercqSébastien CordauxRichard 2012 <p>(<b>A</b>) Sequence spanning from positions −25 to +10 relative to full-length <i>Kl.pn</i>.I5 copy insertion sites are displayed and compared to predicted EBS. Identical bases and those which fit the Watson-Crick (stars) or the Wobble (plus) base-pairing with EBS motifs were used to construct the consensus homing site. (<b>B</b>) Regions surrounding <i>Di.ze</i>.I1 and <i>So.gl</i>.I1 full-length copies are displayed and compared to predicted EBS1 and EBS3. Most represented nucleotides at a given position and which fit the Watson-Crick (stars) or the Wobble (plus) base-pairing with EBS motifs were used to construct the consensus homing site. Stem-loops belonging to Rho-independent transcription terminators inferred by ARNold <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0052268#pone.0052268-Naville1" target="_blank">[58]</a> are colored in blue (stems) and red (loops). Underlined sequences are stem-loops not detected by ARNold. (<b>C</b>) Weblogo diagram of the −25 to +10 region surrounding the 26 full-length c-<i>Ha.de</i>.I1 copies belonging to subgroup 1. Bases which show relative conservation were used to construct the consensus homing site.</p>