Öztürk, Hakime Ozkirimli, Elif Özgür, Arzucan Multiple sequence alignment on the protein data set. <p>Multiple sequence alignment was performed on 86 proteins in the data set using COBALT [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117874#pone.0117874.ref055" target="_blank">55</a>]. The resulting phylogenetic tree is visualized using Interactive tree of life (ITOL) [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117874#pone.0117874.ref056" target="_blank">56</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117874#pone.0117874.ref057" target="_blank">57</a>] (Blue: PBPs, Green: Ambler Class A, Dark Blue: Ambler Class C, Yellow: Ambler Class D, Orange: Ambler Class B. Same coloring scheme is used in the next figure.)</p> similarity;Penicillin Binding Proteins;ligand;lactamase;edge weight settings;pbp;lactam;protein;information;cell wall biosynthesis;Antibiotic resistance;Protein Data Bank;model 2015-02-17
    https://plos.figshare.com/articles/figure/_Multiple_sequence_alignment_on_the_protein_data_set_/1310625
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