10.1371/journal.pgen.1004915.g004
Irina Makarevitch
Irina
Makarevitch
Amanda J. Waters
Amanda
J. Waters
Patrick T. West
Patrick
T. West
Michelle Stitzer
Michelle
Stitzer
Candice N. Hirsch
Candice
N. Hirsch
Jeffrey Ross-Ibarra
Jeffrey
Ross-Ibarra
Nathan M. Springer
Nathan
M. Springer
Validations of correlation between stress-induced up-regulation of gene expression and presence of TEs.
Public Library of Science
2015
Abiotic Stress Transposable elements
TE families
gene expression response
stress conditions
gene expression
dna
Many genes exhibit
abiotic stress
TE transcript levels
2015-01-08 03:30:25
Figure
https://plos.figshare.com/articles/figure/_Validations_of_correlation_between_stress_induced_up_regulation_of_gene_expression_and_presence_of_TEs_/1286607
<p>The presence/absence of insertions of ZM00346 elements in the promoter of GRMZM2G108149 (A), GRMZM2G071206 (B), GRMZM2G400718 (C), GRMZM2G102447 (D), and GRMZM2G108057 (E) was assessed by PCR and genotypes were divided according to whether this insertion is present or not (displayed in alphabetical order). The changes in gene expression are shown as log<sub>2</sub>(stress/control) values determined using qRT-PCR for each genotype. Vertical brackets correspond to standard error based on three technical replicates of qRT-PCR experiments. The functional annotations for these genes are as follows: GRMZM2G108149- conserved protein involved in amino acid metabolism; GRMZM2G071206- conserved expressed protein involved in nitrogen metabolism; GRMZM2G400718 - unknown conserved protein; GRMZM2G102447 – GCIP interacting protein involved in regulating cell cycle; GRMZM2G108057 – cation transporting ATPase.</p>