10.1371/journal.pone.0098464.t002 John N. Hutchinson John N. Hutchinson Towfique Raj Towfique Raj Jes Fagerness Jes Fagerness Eli Stahl Eli Stahl Fernando T. Viloria Fernando T. Viloria Alexander Gimelbrant Alexander Gimelbrant Johanna Seddon Johanna Seddon Mark Daly Mark Daly Andrew Chess Andrew Chess Robert Plenge Robert Plenge Confirmation of ASM in a subset of candidate cis-regulated ASM variants. Public Library of Science 2014 Biochemistry dna DNA modification Computational biology genome analysis Genome-wide association studies genetics gene expression Gene regulation genomics Functional genomics Human genetics Genetic association studies epigenetics Genetics of disease immunology Clinical immunology Autoimmune diseases Genetics of the immune system asm subset cis-regulated 2014-06-09 02:58:04 Dataset https://plos.figshare.com/articles/dataset/_Confirmation_of_ASM_in_a_subset_of_candidate_cis_regulated_ASM_variants_/1050822 <p>Results from microarray and next-generation bisulfite sequencing ASM assays of ten variant-containing regions. The table shows the CpG position, whether it is found within an MSRE site and the Bonferroni adjusted chi-square based p-values of the association of methylation at this CpG with either the reference of alternate alleles. The allele with the highest number percentage of methylated reads was designated the most frequently methylated allele (REF = reference, ALT = alternate) and compared to that from the microarray data; for all CpGs that were within MSRE sites and showed significant association of methylation with an allele in the sequencing assay the methylated allele matched that of the microarray assay. For more details, see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0098464#pone.0098464.s020" target="_blank">Table S3</a>.</p>